To upload new genome references (or new versions), please follow these instructions:
...
4 - Create a .bedfile from the gft gtf file.
To create a .bed file, please download the bedtools package tools gtfToGenePred and genePredToBed and use the following command linelines:
| Code Block |
|---|
gtf2bed <gtfToGenePred annotation_organism_ercc_sirv_biotyped.gtf >annotation_organism_ercc_sirv.genepred genePredToBed annotation_organism_ercc_sirv.bedgenepred annotation_organism_ercc_si |
5 - Generate a final directory containing both genome and annotation files.
...