The result files included in the bundle-results folder available for download includeare:
UMI_extracted .fastq files (If UMIs are included in the library prep)Trimmed .fastq files with fastqc (.html) and stats reports / Trimmed statistics and fastqc report
Aligned .bam files with alignment report / Aligned log files
Collapsed aligned .bam files and stats reports (if UMIs are included in the library prep) / UMI_collapsed statistics
Coverage .bw filesGene counting .tsv files for each samples
Transcript_concentration .? (Only for CORALL data analysis)
Counting_summary .tsv file
DEG: normalized counts .tsv files, pairwise summary .txt and results .tsv files for each condition comparison (when differential gene expression is specified)
Multiqc rseqc report
NOTE: Trimmed.fastq files and aligned.bam files can be downloaded separately. Please be mindful that depending on the size and number of the files, you may need to purchase additional quotas for download. If this is the case, please contact sales@lexogen.com.