To upload new genome references (or new genome versions), please follow these instructions:
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4 - Create a .bedfile from the gft gtf file.
To create a .bed file, please download the bedtools package tools gtfToGenePred and genePredToBed and use the following command linelines:
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gtf2bedgtfToGenePred < annotation_organism_ercc_sirv_biotyped.gtf >annotation_organism_ercc_sirv.genepred genePredToBed annotation_organism_ercc_sirv.genepred annotation_organism_ercc_sirv.bed |
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5 - Generate a final directory containing both genome and annotation files.
Copy First, copy the files:
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cp gene_description.txt annotation_organism_ercc_sirv.fa annotation_organism_ercc_sirv_biotyped.gtf annotation_organism_ercc_sirv.bed ./Directory_folder/ |
Compress Then, compress the resulting folder (tar.gz):
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