The result files available for download include:
UMI_extracted .fastq files (If UMIs are included in the library prep)Trimmed .fastq files with fastqc (.html) and stats reports / Trimmed statistics and fastqc report
Aligned .bam files with alignment report / Aligned log files
Collapsed aligned .bam files and stats reports (if UMIs are included in the library prep) / UMI_collapsed statistics
Coverage .bw filesGene counting .tsv files for each samples
Transcript_concentration .? (Only for CORALL data analysis)
Counting_summary .tsv file
DEG: normalized counts .tsv files, pairwise summary .txt and results .tsv files for each condition comparison (when differential gene expression is specified)
Multiqc rseqc report