Yes. We observe a high correlation between data obtained with the 3‘ mRNA-Seq V2 Library Prep Kit FWD with Unique Dual Indices (12nt) and the 3‘ mRNA-Seq Library Prep Kit FWD with Unique Dual Indices (V1).
Figure 1 | Correlation plot obtained with 500ng of UHR + SIRV3 control Set, comparing QuantSeq UDI “V1” (x axis) and the new “V2” (y axis).