Lexogen Online FAQs

Skip to end of metadata
Go to start of metadata

You are viewing an old version of this page. View the current version.

Compare with Current View Page History

Version 1 Next »

The QuantSeq Data Analysis pipeline includes:

  • UMI extraction (if UMIs are introduced in the library preps)

  • Trimming (Cutadapt V1.18)

  • FastQC analysis of trimmed FASTQ files (FASTQC V0.11.7)

  • Alignment (STAR V2.6.1a)

  • UMI collapsing (more info can be found here)

  • MultiQC analysis of aligned files (multiqc V1.5)

  • Gene counting (FeatureCounts V1.6.4)

  • Differential gene expression analysis (DESeq2 V1.18.1)

  • No labels

Have feedback for us or need more information? Send us a request or write to us at support@lexogen.com.