Data analysis includes the following:
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basic statistics (number of input reads, number of uniquely mapping reads, % of uniquely mapping reads, average input read length)
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alignment rates
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gene counts
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read distribution statistics
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information on sample reproducibility
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Our deliverables include all standard data analysis outputs, like:
Demultiplexed files (FASTQ)
Trimmed files (FASTQ)
Aligned files (BAM)
Rseqc (.txt)
Gene counts + counting summary (.tsv)
Differential expression + DE summary (.tsv)
PCA plot
Multiqc reports – raw, trimmed, alignment, rseqc (.html)
Depending on the RNA- or DNA-Seq application, additional specific devilerables are included. Please request more information during consultancy or via services@lexogen.com. Additional analyses can be requested, depending on the scope these may be connected with an extra charge. All deliverables are summarized in a pdf report.