The result files included in the bundle-results folder available for download are:
Trimmed_statistics and trimmed_fastqc report
Aligned log files
UMI_collapsed statistics
Gene counting .tsv file for each sample
Counting_summary folder
Transcript_concentration folder (Only for CORALL data analysis, obtained with Mix2 )
For Differential expression analysis: normalized counts .tsv files, pairwise summary .txt and results .tsv files for each pairwise comparison (when differential gene expression is specified)
Multiqc rseqc report
NOTE: Trimmed.fastq files, aligned.bam and collapsed.bam files are not part of the bundle-result folder but can be downloaded separately. Please be mindful that depending on the size and number of files to download, you may need to purchase additional quotas.
If additional quotas are required, please contact sales@lexogen.com.