WORKING_COPY: What species are available for my data analysis?

Analysis pipelines for QuantSeq (FWD, FWD-UMI, and REV) and CORALL sequencing data are currently available for the following species:

Common name	Scientific name	Source	Link
Sponge	Amphimedon queenslandica	Ensembl release 55	http://ftp.ensemblgenomes.org/pub/release-55/metazoa/gtf/amphimedon_queenslandica/
Arabidopsis	Arabidopsis halleri	Ensembl release 55	http://ftp.ensemblgenomes.org/pub/release-55/plants/gtf/arabidopsis_halleri/
Arabidopsis Thale cress	Arabidopsis thaliana	Ensembl release 55	http://ftp.ensemblgenomes.org/pub/release-55/plants/gtf/arabidopsis_thaliana/
Bartonella	Bartonella Hhenselae	Ensembl release 55	http://ftp.ensemblgenomes.org/pub/release-55/ - Proper link needed here!
Cow	Bos taurus	Ensembl release 108	https://ftp.ensembl.org/pub/release-108/gtf/bos_taurus/
Purple False Brome	Brachypodium distachyon	Ensembl release 55	http://ftp.ensemblgenomes.org/pub/release-55/plants/gtf/brachypodium_distachyon/
Nematode Roundworm	Caenorhabditis elegans	Ensembl release 107	https://ftp.ensembl.org/pub/release-107/gtf/caenorhabditis_elegans/
Yeast	Candida albicans	Ensembl release 55	http://ftp.ensemblgenomes.org/pub/release-55/fungi/gtf/candida_albicans/
Dog	Canis lupus familiaris	Ensembl release 107	https://ftp.ensembl.org/pub/release-107/gtf/canis_lupus_familiaris/
Goat	Capra hircus	Ensembl release 108	https://ftp.ensembl.org/pub/release-108/gtf/capra_hircus/
Painted Turtle	Chrysemys picta bellii	Ensembl release 108	https://ftp.ensembl.org/pub/release-108/gtf/chrysemys_picta_bellii/
COVID19	COVID19 (SARS-CoV-2)	Ensembl MN908947.3	http://ftp.ensemblgenomes.org/pub/viruses/gtf/sars_cov_2/
CHO-K1 Cell Line	Cricetulus griseus	Ensembl release 108	https://ftp.ensembl.org/pub/release-108/gtf/cricetulus_griseus_chok1gshd/
Zebrafish	Danio rerio	Ensembl release 108	https://ftp.ensembl.org/pub/release-108/gtf/danio_rerio/
Water flea	Daphnia pulex	NCBI refseq GCF_021134715.1_ASM2113471v1	https://www.ncbi.nlm.nih.gov/datasets/genome/GCF_021134715.1/
Fruit Fly	Drosophila melanogaster	Ensembl release 108	https://ftp.ensembl.org/pub/release-108/gtf/drosophila_melanogaster/
African Oil Palm	Elaeis guineensis	NCBI refseq GCF_000442705.1	https://www.ncbi.nlm.nih.gov/datasets/genome/GCF_000442705.1/
Cat	Felis catus	Ensembl release 107	https://ftp.ensembl.org/pub/release-107/gtf/felis_catus/
Fungus	Fusarium oxysporum	Ensembl release 55	http://ftp.ensemblgenomes.org/pub/release-55/fungi/gtf/fusarium_oxysporum/
Chicken	Gallus gallus	Ensembl release 108	https://ftp.ensembl.org/pub/release-108/gtf/gallus_gallus/
Human	Homo sapiens	Ensembl release 107	https://ftp.ensembl.org/pub/release-107/gtf/homo_sapiens/
Barley	Hordeum vulgare ~~- barley~~	Ensembl release 55	http://ftp.ensemblgenomes.org/pub/release-55/plants/gtf/hordeum_vulgare/
Yeast	Kluyveromyces lactis	NCBI refseq GCF_000002515.2	https://www.ncbi.nlm.nih.gov/datasets/genome/GCF_000002515.2/
Mouse	Mus musculus	Ensembl release 107	https://ftp.ensembl.org/pub/release-107/gtf/mus_musculus/
Brain-Eating Amoeba	Naegleria fowleri	NCBI refseq GCF_008403515.1_ASM840351v1	https://www.ncbi.nlm.nih.gov/datasets/genome/GCF_008403515.1/
Starlet Sea Anemone	Nematostella vectensis	NCBI refseq GCF_932526225.1_jaNemVect1.1	https://www.ncbi.nlm.nih.gov/datasets/genome/GCF_932526225.1/
Rabbit	Oryctolagus cuniculus	Ensembl release 108	https://ftp.ensembl.org/pub/release-108/gtf/oryctolagus_cuniculus/
Rice	Oryza sativa	Ensembl release 55	http://ftp.ensemblgenomes.org/pub/release-55/plants/gtf/oryza_sativa/
Western Balsam Poplar Tree	Populus trichocarpa	Ensembl release 55	http://ftp.ensemblgenomes.org/pub/release-55/plants/gtf/populus_trichocarpa/
Pseudomonas	Pseudomonas Aaeruginosa	NCBI refseq GCF_000006765.1_ASM676v1.	https://www.ncbi.nlm.nih.gov/datasets/genome/GCF_000006765.1/
Rat	Rattus norvegicus	Ensembl release 107	https://ftp.ensembl.org/pub/release-107/gtf/rattus_norvegicus/
Baker’s Yeast	Saccharomyces cerevisiae	Ensembl release 108	https://ftp.ensembl.org/pub/release-108/gtf/saccharomyces_cerevisiae/
Salmon	Salmo salar	Ensembl release 108	https://ftp.ensembl.org/pub/release-108/gtf/salmo_salar/
Tomato	Solanum lycopersicum	Ensembl release 55	http://ftp.ensemblgenomes.org/pub/release-55/plants/gtf/solanum_lycopersicum/
Potato	Solanum tuberosum	Ensembl release 55	http://ftp.ensemblgenomes.org/pub/release-55/plants/gtf/solanum_tuberosum/
Sorghum	Sorghum bicolor	Ensembl release 55	http://ftp.ensemblgenomes.org/pub/release-55/plants/gtf/sorghum_bicolor/
Pig	Sus scrofa	Ensembl release 108	https://ftp.ensembl.org/pub/release-108/gtf/sus_scrofa/
Cacao Tree	Theobroma cacao criollo	Ensembl release 55	http://ftp.ensemblgenomes.org/pub/release-55/plants/gtf/theobroma_cacao_criollo/
Fungus	Yarrowia lipolytica	Ensembl release 55	http://ftp.ensemblgenomes.org/pub/release-55/fungi/gtf/yarrowia_lipolytica/
Maize/Corn	Zea mays	Ensembl release 55	http://ftp.ensemblgenomes.org/pub/release-55/plants/gtf/zea_mays/